Comparing Partitions

Downloads



In this page you can find user-developed code for Bionumerics, Matlab or PHP. The code is distributed under the GNU General Public Licence (Licence).
Report any bugs or feel free to contribute with your code. Send us an email and we'll be happy to post your code here!

BioNumerics


Scripts for BioNumerics™ software from Applied Maths
These scripts were tested in BioNumerics versions 4.5 and 4.61.
Please refer to BioNumerics documentation for instructions on installing the scripts.
These scripts allow to do the calculations on data on BioNumerics database fields.

  1. Simpson's Index of Diversity and 95% confidence (script)
  2. Adjusted Rand, Wallace and Adjusted Wallace Coefficients (script)

More scripts will be added here for additional functionality in manipulating BioNumerics database fields with the goal of using data for comparing typing methods results.

MATLAB


MATLAB® functions for:

  1. Simpson's Index of Diversity and 95% Confidence Interval (m file)
  2. Rand, adjusted Rand, Wallace and other partition comparison coefficients (m file)

PHP


PHP function scripts for:

  1. Simpson's Index of Diversity and 95% Confidence Interval (php file)
  2. Contigency table creation (php file)
  3. Rand, adjusted Rand, Wallace (php file)


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